species:   Rhsol
pid:       PID0489
parent:    Rhi-milR-15
paralog:   
locus:     KB317821.1:25309-25396
matures:   ['AGAAUGGGCUUGCAUGAACAGG', 'UGGACAGACAAGCUUCUGUUGG']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB317821.1:25309-25396

1 out of bounds
33 alignments
33 proper strand
29 stranded perfect matches

       *************************                      *************************         
UGAAGUGCCUAGAAUGGGCUUGCAUGAACAGGUUUAGCAACUGGGACAAUGCAAUUUGGACAGACAAGCUUCUGUUGGGGACUGACAA
...(((.(((((...(((((((..((..((((((..(((..........)))))))))..))..)))))))...))))).))).....
----------AGAAUGGGCUUGCAUGAACAGG-------------------------------------------------------- l=22 a=0 c
--------------------------------------------------------UGGACAGACAAGCUUCUGUUGG---------- l=22 a=0 c*
--------------------------------UUUAGCAACUGGGACAAUGCA----------------------------------- l=21 a=17 ma
--------------------------------------------------------UGGACAGACAAGCUUCUGUUGG---------- l=22 a=0 ma*

-----------------------------------------UGGGACAAUGCAAUUUGGACAGA------------------------ l=23 a=1 
--------------------------------UUUAGCAACUGGGACAAUGC------------------------------------ l=20 a=1 
--------------------------------UUUAGCAACUGGGACAAUGCA----------------------------------- l=21 a=17 (ma)
--------------------------------UUUAGCAACUGGGACAAUGCg----------------------------------- l=21 a=1 
--------------------------------gUUAGCAACUGGGACAAUGCA----------------------------------- l=21 a=1 
--------------------------------UUUAGCAACUGGGACAAUGCAA---------------------------------- l=22 a=1 
----------------------------CAGGUUUAGCAACUGGGACAAUGC------------------------------------ l=24 a=1 
--------------UGGGCUUGCAUGAACAGGU------------------------------------------------------- l=19 a=1 
--------------UGGGCUUGCAUGAACcGGUUUAG--------------------------------------------------- l=23 a=1 
-----------GAAUGGGCUUGCAUGAACA---------------------------------------------------------- l=19 a=1 
---------UAGAAUGGGCUUGCAUGAACAGG-------------------------------------------------------- l=23 a=6 
---------UAGAAUGGGCUUGCAUGAACcGG-------------------------------------------------------- l=23 a=1 

mb-00010
ax-1001011
ku-01
ss-111111101110
fn-111
